Changes in version 0.4.1.9000                      

  - Starting a new development version

                 Changes in version 0.4.1 (2025-08-18)                  

  - Fixed invalid lambda.1se computation (issue #69)
  - Changed the presentation of CV plots to reflect that fix
  - Updated documentation and the vignette

                 Changes in version 0.4.0 (2023-08-07)                  

  - Variable selection algorithm var_sel added
  - GLAMER implemented as a net version respective to its $\tau$
    parameter (issue #57)
  - Features package load message with citation info
  - Fixing a problem with zero-length arrow in CV plots resulting from
    sd=0 (problem still remaining in issue #39 after the 0.3.2.9002 fix)
  - Citation update
  - Hierarchical clustering based on segmentation of 1D points with
    hclust1d package for PDMR and GLAMER

                 Changes in version 0.3.4 (2023-01-31)                  

  - PDMR added

                 Changes in version 0.3.3 (2022-11-15)                  

  - Updating documentation to reflect that for inference the matrix must
    be provided without the intercept column
  - Fixing incorrect inference for columns not in
    first-factors-then-numerics sequence
  - Candidate fix for warnings related to issue #33
  - Setting a default nlambda value to 100 in cv.DMRnet() (issue #41)
  - Fixing problems when few or no models are available in cross
    validation
  - Fixing problems when few or no models are available after grpreg
    (issue #39)
  - Refactoring the code to distribute the no-model fixes from gaussian
    DMRnet into binomial family DMRnet and both SOSnets and GLAMERs
  - Fixing a few other minor long-standing issues in GIC-indexed cross
    validation
  - Fixing df.1se in GIC-indexed cross validation for binomial GLAMER
  - Fixing incorrect loglik calculation for the first (largest) model in
    binomial family, for both GLAMER (-Inf) and DMRnet (incorrect)

                 Changes in version 0.3.2 (2022-10-07)                  

  - Improved readability of a getting-started vignette
  - Fixed a bug in model-indexed cross validation related to folds with
    different model sizes
  - Added df.1se to GIC-indexed cross validation
  - Improved CV plots with df.1se model
  - Improved readability of README on CRAN (issue #32)
  - Welcome message on package load added

                 Changes in version 0.3.1 (2022-07-19)                  

Major changes

  - GLAMER (Group LAsso MERger) algorithm added
  - Rebuild of the existing cross validation routine (models indexed by
    model dimension)
  - New cross validation routine added (models indexed by GIC) and made
    a new default
  - Handling of mismatched factor levels restructured

Stability improvements

  - Adding pivots in SOSnet for gaussian families
  - Adding a try-catch clause to recalculate QR decomposition for
    pivoted columns within rank in case of failure
  - Adding the regularization in gaussian family in DMR direct calls and
    calls via DMRnet
  - fixing NA values resulting in attempting non-penalized regression in
    case of non-full rank design matrices

Other improvements

  - Fixing how the parameters get passed in plot family of functions
  - Returning only non-zero coefficients in coef
  - Fixing DRMnet and cross validation in handling data with a single
    two-factor column
  - Fixing negative Wald statistics in binomial case
  - Workaround in GLAMER for cases of grpreg not observing a group
    constraint